PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G077700.1
Common NamePHAVU_006G077700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 238aa    MW: 26567.3 Da    PI: 7.959
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G077700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.2e-161051243
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        +i  +s+r+ tf kR+ng++KK  E+S+LC+++++ ii+s++
  Phvul.006G077700.1 10 FITKTSKRKATFKKRKNGLIKKIGEISILCGIQACAIIYSPD 51
                        68899***********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-17161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.862149IPR002100Transcription factor, MADS-box
CDDcd002661.34E-28284No hitNo description
SuperFamilySSF554553.66E-22396IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-7323IPR002100Transcription factor, MADS-box
PfamPF003196.2E-161051IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MARKKVDLTF ITKTSKRKAT FKKRKNGLIK KIGEISILCG IQACAIIYSP DEPDQPEVWP  60
SEEGVESAIS RFRSVSELEQ SKKMFCQESF LRQRIVKVQE QLKKVRNENR KKEIGHLISQ  120
YITVGNNLES ANIIDLNDIS FLADQCLEDI TKKISARKAQ MVTPVAENGG QTMTHGGQTV  180
THGEQAQVNH VQGPYTDVDA MQNMNWSSDI INAGAANDML ALEDVNVQSG WLNQYIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVDLTFITKTSKRKATFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-161AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146875.11e-178hypothetical protein PHAVU_006G077700g
TrEMBLV7BLL01e-178V7BLL0_PHAVU; Uncharacterized protein
STRINGGLYMA03G13570.12e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-41AGAMOUS-like 80